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US20250388593, Example 282

E3L004129
Internal ID: BDB004129
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004129/BDB004129.sdf
Basic Properties
Compound ID
E3L004129
Internal ID
BDB004129
Molecular formula
C23H29N5O4
Molecular weight
439.516000
Exact mass
439.221954
XLogP
3.3002
TPSA
96.7700
HBA / HBD
5 / 1
Rotatable bonds
2
Heavy atoms / rings
32 / 4
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
SGKGYFVJJQTXNA-UHFFFAOYSA-N
SMILES
Cn1nc(N2CC=CC(=O)NC2=O)c2ccc(C3CCN(C(=O)OC(C)(C)C)CC3)cc21
Aliases
BDBM95523 (preferred) US20250388593, Example 282 (source_name) BDBM95523 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95523 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95523 Open - 10.7270/Q2TX3M56
PubChem CID175638945 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1nc(N2CC=CC(=O)NC2=O)c2ccc(C3CCN(C(=O)OC(C)(C)C)CC3)cc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004129/BDB004129.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004129/BDB004129.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004129/BDB004129.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004129/BDB004129.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004129/BDB004129.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95523 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1