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US20250388593, Example 296

E3L004137
Internal ID: BDB004137
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004137/BDB004137.sdf
Basic Properties
Compound ID
E3L004137
Internal ID
BDB004137
Molecular formula
C24H24ClN5O3S
Molecular weight
498.008000
Exact mass
497.128838
XLogP
4.9253
TPSA
103.4300
HBA / HBD
6 / 3
Rotatable bonds
3
Heavy atoms / rings
34 / 5
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
HXVFUHLXDBMFOS-UHFFFAOYSA-N
SMILES
Cc1ccc(NC(=O)Nc2ccc3nc(N4CCC5(CCCC(=O)NC5=O)C4)sc3c2)cc1Cl
Aliases
BDBM95531 (preferred) US20250388593, Example 296 (source_name) BDBM95531 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95531 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95531 Open - 10.7270/Q2TX3M56
PubChem CID171843955 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(NC(=O)Nc2ccc3nc(N4CCC5(CCCC(=O)NC5=O)C4)sc3c2)cc1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004137/BDB004137.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004137/BDB004137.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004137/BDB004137.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004137/BDB004137.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004137/BDB004137.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95531 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1