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US20250388593, Example 328

E3L004165
Internal ID: BDB004165
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004165/BDB004165.sdf
Basic Properties
Compound ID
E3L004165
Internal ID
BDB004165
Molecular formula
C44H52ClN11O4S
Molecular weight
866.493000
Exact mass
865.361298
XLogP
6.3814
TPSA
181.3900
HBA / HBD
11 / 3
Rotatable bonds
14
Heavy atoms / rings
61 / 8
Activity summary
Kd < 50000.00000000 nM
1 activity record(s) imported
InChIKey
SPKMTNUVBMEGHH-UJBMNDQASA-N
SMILES
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)c1cc3c(N4CCC5(CCCC(=O)NC5=O)C4)ncnc3n1C)c1nnc(C)n1-2
Aliases
BDBM95559 (preferred) US20250388593, Example 328 (source_name) BDBM95559 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM95559 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95559 Open - 10.7270/Q2TX3M56
PubChem CID171843863 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)c1cc3c(N4CCC5(CCCC(=O)NC5=O)C4)ncnc3n1C)c1nnc(C)n1-2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004165/BDB004165.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004165/BDB004165.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004165/BDB004165.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004165/BDB004165.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004165/BDB004165.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM95559 Kd <50000 nM Uncertain DOI: 10.7270/Q2TX3M56 1