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BDBM97080

E3L004302
Internal ID: BDB004302
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004302/BDB004302.sdf
Basic Properties
Compound ID
E3L004302
Internal ID
BDB004302
Molecular formula
C46H52N6O6
Molecular weight
784.958000
Exact mass
784.394833
XLogP
5.4577
TPSA
136.5700
HBA / HBD
10 / 3
Rotatable bonds
9
Heavy atoms / rings
58 / 9
Activity summary
IC50 unknown 2750.00000000 nM
2 activity record(s) imported
InChIKey
KSMVHWVTYYBUSG-VJXFDVIISA-N
SMILES
COc1nc(C(=O)NC2CCC(=O)NC2=O)ccc1N1CCN(CC2CCC3(CC2)CN(c2ccc([C@@H]4c5ccc(O)cc5OC[C@@H]4c4ccccc4)cc2)C3)CC1
Aliases
BDBM97080 (preferred) N-(2,6-dioxopiperidin-3-yl)-5-(4-((2-(4-((3S,4R)-7-hydroxy-3-phenylchroman-4-yl)phenyl)-2-azaspiro[3.5]nonan-7-yl)methyl)piperazin-1-yl)-6-methoxypicolinamide (source_name) BDBM97080 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM97080 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM97080 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM97080 Open - 10.7270/Q22F7T7F
PubChem CID177910069 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1nc(C(=O)NC2CCC(=O)NC2=O)ccc1N1CCN(CC2CCC3(CC2)CN(c2ccc([C@@H]4c5ccc(O)cc5OC[C@@H]4c4ccccc4)cc2)C3)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004302/BDB004302.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004302/BDB004302.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004302/BDB004302.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004302/BDB004302.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004302/BDB004302.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM97080 IC50 2750 nM Low DOI: 10.7270/Q22F7T7F 2 source records