< Back to small molecule database

BDBM112743

E3L004507
Internal ID: BDB004507
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB004507/BDB004507.sdf
Basic Properties
Compound ID
E3L004507
Internal ID
BDB004507
Molecular formula
C28H30Cl2FN3O4
Molecular weight
562.469000
Exact mass
561.159740
XLogP
4.0469
TPSA
99.6900
HBA / HBD
5 / 4
Rotatable bonds
3
Heavy atoms / rings
38 / 6
Activity summary
IC50 < 5000.00000000 nM
1 activity record(s) imported
InChIKey
PIRIGUPRWKOENE-IOOCNGBKSA-N
SMILES
O=C(NC1CCC(O)CC1)[C@@H]1NC2(CCOCC2)[C@]2(C(=O)Nc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
Aliases
BDBM112743 (preferred) BDBM112743 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM112743 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM112743 Open - 10.7270/Q2W094KC
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(NC1CCC(O)CC1)[C@@H]1NC2(CCOCC2)[C@]2(C(=O)Nc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004507/BDB004507.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004507/BDB004507.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004507/BDB004507.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004507/BDB004507.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004507/BDB004507.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM112743 IC50 <5000 nM Uncertain DOI: 10.7270/Q2W094KC 1