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BDBM124954

E3L005219
Internal ID: BDB005219
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB005219/BDB005219.sdf
Basic Properties
Compound ID
E3L005219
Internal ID
BDB005219
Molecular formula
C24H26N4O2
Molecular weight
402.498000
Exact mass
402.205576
XLogP
3.4482
TPSA
82.4300
HBA / HBD
3 / 2
Rotatable bonds
4
Heavy atoms / rings
30 / 5
Activity summary
Kd unknown 30.00000000 nM
1 activity record(s) imported
InChIKey
VIRDOICEJCBSHC-UHFFFAOYSA-N
SMILES
CC1c2cccc(C(N)=O)c2C(=O)N1C1CCN(Cc2ccc3[nH]ccc3c2)CC1
Aliases
BDBM124954 (preferred) 2-[1-(1H-indol-5-ylmethyl)piperidin-4-yl]-1-methyl-3-oxo-1H-isoindole-4-carboxamide (source_name) BDBM124954 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM124954 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM124954 Open - 10.7270/Q24F1PDC
PubChem CID49873228 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC1c2cccc(C(N)=O)c2C(=O)N1C1CCN(Cc2ccc3[nH]ccc3c2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005219/BDB005219.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005219/BDB005219.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005219/BDB005219.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005219/BDB005219.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005219/BDB005219.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM124954 Kd 30 nM High DOI: 10.7270/Q24F1PDC 1