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BDBM129809

E3L005317
Internal ID: BDB005317
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB005317/BDB005317.sdf
Basic Properties
Compound ID
E3L005317
Internal ID
BDB005317
Molecular formula
C26H20Cl2FN5O3
Molecular weight
540.382000
Exact mass
539.092723
XLogP
5.8879
TPSA
82.3700
HBA / HBD
6 / 0
Rotatable bonds
6
Heavy atoms / rings
37 / 6
Activity summary
IC50 unknown 3.60000000 nM
1 activity record(s) imported
InChIKey
NWMSKQFIEYHHRO-UHFFFAOYSA-N
SMILES
COc1ncc(-c2nc3c(n2C2CC2)C(c2ccc(Cl)cc2)N(c2ccc(F)c(Cl)c2)C3=O)c(OC)n1
Aliases
BDBM129809 (preferred) 5-(3-chloro-4-fluorophenyl)-4-(4-chlorophenyl)-3-cyclopropyl-2-(2,4-dimethoxypyrimidin-5-yl)-4H-pyrrolo[3,4-d]imidazol-6-one (source_name) BDBM129809 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM129809 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM129809 Open - 10.7270/Q29P309G
PubChem CID86766913 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ncc(-c2nc3c(n2C2CC2)C(c2ccc(Cl)cc2)N(c2ccc(F)c(Cl)c2)C3=O)c(OC)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005317/BDB005317.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005317/BDB005317.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005317/BDB005317.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005317/BDB005317.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005317/BDB005317.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM129809 IC50 3.6 nM Very high DOI: 10.7270/Q29P309G 1