< Back to small molecule database

BDBM129826

E3L005332
Internal ID: BDB005332
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB005332/BDB005332.sdf
Basic Properties
Compound ID
E3L005332
Internal ID
BDB005332
Molecular formula
C27H23Cl2FN4O3
Molecular weight
541.410000
Exact mass
540.113124
XLogP
6.0340
TPSA
69.3600
HBA / HBD
4 / 0
Rotatable bonds
5
Heavy atoms / rings
37 / 5
Activity summary
IC50 unknown 0.31000000 nM
1 activity record(s) imported
InChIKey
FBIRRCPVUJUTLH-UHFFFAOYSA-N
SMILES
COc1cn(C)c(=O)cc1-c1nc2c(n1C(C)C)C(c1ccc(Cl)cc1)N(c1ccc(F)c(Cl)c1)C2=O
Aliases
BDBM129826 (preferred) 5-(3-chloro-4-fluorophenyl)-4-(4-chlorophenyl)-2-(5-methoxy-1-methyl-2-oxo-4-pyridinyl)-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-one (source_name) BDBM129826 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM129826 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM129826 Open - 10.7270/Q29P309G
PubChem CID86766921 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cn(C)c(=O)cc1-c1nc2c(n1C(C)C)C(c1ccc(Cl)cc1)N(c1ccc(F)c(Cl)c1)C2=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005332/BDB005332.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005332/BDB005332.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005332/BDB005332.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005332/BDB005332.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005332/BDB005332.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM129826 IC50 0.31 nM Very high DOI: 10.7270/Q29P309G 1