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BDBM129853

E3L005359
Internal ID: BDB005359
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB005359/BDB005359.sdf
Basic Properties
Compound ID
E3L005359
Internal ID
BDB005359
Molecular formula
C29H22ClFN6O2
Molecular weight
540.986000
Exact mass
540.147680
XLogP
6.0147
TPSA
107.8300
HBA / HBD
6 / 0
Rotatable bonds
6
Heavy atoms / rings
39 / 5
Activity summary
IC50 unknown 1.93000000 nM
1 activity record(s) imported
InChIKey
WRZQSDMOYZKSGB-UHFFFAOYSA-N
SMILES
COc1ncc(CC#N)cc1-c1nc2c(n1C(C)C)C(c1ccc(C#N)cc1)N(c1cccc(Cl)c1F)C2=O
Aliases
BDBM129853 (preferred) 4-[5-(3-chloro-2-fluorophenyl)-2-[5-(cyanomethyl)-2-methoxy-3-pyridinyl]-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-4-yl]benzonitrile (source_name) BDBM129853 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM129853 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM129853 Open - 10.7270/Q29P309G
PubChem CID86766943 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ncc(CC#N)cc1-c1nc2c(n1C(C)C)C(c1ccc(C#N)cc1)N(c1cccc(Cl)c1F)C2=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005359/BDB005359.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005359/BDB005359.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005359/BDB005359.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005359/BDB005359.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005359/BDB005359.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM129853 IC50 1.93 nM Very high DOI: 10.7270/Q29P309G 1