< Back to small molecule database

BDBM129873

E3L005379
Internal ID: BDB005379
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB005379/BDB005379.sdf
Basic Properties
Compound ID
E3L005379
Internal ID
BDB005379
Molecular formula
C29H29Cl2N5O3
Molecular weight
566.489000
Exact mass
565.164745
XLogP
6.7857
TPSA
82.3700
HBA / HBD
6 / 0
Rotatable bonds
6
Heavy atoms / rings
39 / 5
Activity summary
IC50 unknown 0.38000000 nM
1 activity record(s) imported
InChIKey
IVFVAIZFSWHLQW-UHFFFAOYSA-N
SMILES
COc1ncc(-c2nc3c(n2C(C)C)C(C)(c2ccc(Cl)cc2C)N(c2cc(Cl)ccc2C)C3=O)c(OC)n1
Aliases
BDBM129873 (preferred) 6-(4-Chloro-2-methyl-phenyl)-5-(5-chloro-2-methyl-phenyl)-2-(2,4-dimethoxy-pyrimidin-5-yl)-1-isopropyl-6-methyl-5,6-dihydro-1H-pyrrolo[3,4-d]imidazol-4-one (source_name) BDBM129873 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM129873 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM129873 Open - 10.7270/Q29P309G
PubChem CID86766954 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ncc(-c2nc3c(n2C(C)C)C(C)(c2ccc(Cl)cc2C)N(c2cc(Cl)ccc2C)C3=O)c(OC)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005379/BDB005379.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005379/BDB005379.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005379/BDB005379.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005379/BDB005379.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005379/BDB005379.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM129873 IC50 0.38 nM Very high DOI: 10.7270/Q29P309G 1