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BDBM130117

E3L005575
Internal ID: BDB005575
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB005575/BDB005575.sdf
Basic Properties
Compound ID
E3L005575
Internal ID
BDB005575
Molecular formula
C19H25N3O2
Molecular weight
327.428000
Exact mass
327.194677
XLogP
2.7509
TPSA
57.3600
HBA / HBD
4 / 2
Rotatable bonds
4
Heavy atoms / rings
24 / 4
Activity summary
IC50 unknown 3540.00000000 nM
1 activity record(s) imported
InChIKey
JXQCBWSFPSZBGQ-UHFFFAOYSA-N
SMILES
O=c1[nH]c2cc(OCCN3CCCCC3)ccc2c2c1CCCN2
Aliases
BDBM130117 (preferred) 8-(2-piperidin-1-ylethoxy)-2,3,4,6-tetrahydro-1H-benzo[h][1,6]naphthyridin-5-one (source_name) BDBM130117 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM130117 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM130117 Open - 10.7270/Q2SQ8Z3Z
PubChem CID58424982 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=c1[nH]c2cc(OCCN3CCCCC3)ccc2c2c1CCCN2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005575/BDB005575.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005575/BDB005575.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005575/BDB005575.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005575/BDB005575.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005575/BDB005575.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM130117 IC50 3540 nM Low DOI: 10.7270/Q2SQ8Z3Z 1