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BDBM130120

E3L005578
Internal ID: BDB005578
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB005578/BDB005578.sdf
Basic Properties
Compound ID
E3L005578
Internal ID
BDB005578
Molecular formula
C16H21N3O
Molecular weight
271.364000
Exact mass
271.168462
XLogP
2.5088
TPSA
48.1300
HBA / HBD
3 / 2
Rotatable bonds
2
Heavy atoms / rings
20 / 3
Activity summary
IC50 unknown 50.00000000 nM
1 activity record(s) imported
InChIKey
LCDJKORPUPZVMK-UHFFFAOYSA-N
SMILES
CC(c1ccc2c3c(c(=O)[nH]c2c1)CCCN3)N(C)C
Aliases
BDBM130120 (preferred) 8-[1-(dimethylamino)ethyl]-2,3,4,6-tetrahydro-1H-benzo[h][1,6]naphthyridin-5-one (source_name) BDBM130120 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM130120 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM130120 Open - 10.7270/Q2SQ8Z3Z
PubChem CID58424965 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(c1ccc2c3c(c(=O)[nH]c2c1)CCCN3)N(C)C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005578/BDB005578.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005578/BDB005578.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005578/BDB005578.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005578/BDB005578.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005578/BDB005578.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM130120 IC50 50 nM High DOI: 10.7270/Q2SQ8Z3Z 1