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BDBM130140

E3L005598
Internal ID: BDB005598
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB005598/BDB005598.sdf
Basic Properties
Compound ID
E3L005598
Internal ID
BDB005598
Molecular formula
C17H21N3O3
Molecular weight
315.373000
Exact mass
315.158292
XLogP
1.7927
TPSA
85.4300
HBA / HBD
4 / 3
Rotatable bonds
5
Heavy atoms / rings
23 / 3
Activity summary
IC50 unknown 920.00000000 nM
1 activity record(s) imported
InChIKey
XWZVFZUSRYAYJC-UHFFFAOYSA-N
SMILES
CN(CCC(=O)O)Cc1ccc2c3c(c(=O)[nH]c2c1)CCCN3
Aliases
BDBM130140 (preferred) 3-[methyl-[(5-oxo-2,3,4,6-tetrahydro-1H-benzo[h][1,6]naphthyridin-8-yl)methyl]amino]propanoic acid (source_name) BDBM130140 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM130140 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM130140 Open - 10.7270/Q2SQ8Z3Z
PubChem CID58425016 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(CCC(=O)O)Cc1ccc2c3c(c(=O)[nH]c2c1)CCCN3 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005598/BDB005598.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005598/BDB005598.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005598/BDB005598.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005598/BDB005598.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005598/BDB005598.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM130140 IC50 920 nM Moderate DOI: 10.7270/Q2SQ8Z3Z 1