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BDBM130186

E3L005642
Internal ID: BDB005642
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB005642/BDB005642.sdf
Basic Properties
Compound ID
E3L005642
Internal ID
BDB005642
Molecular formula
C14H16N2O3
Molecular weight
260.293000
Exact mass
260.116092
XLogP
1.3871
TPSA
74.3500
HBA / HBD
4 / 3
Rotatable bonds
2
Heavy atoms / rings
19 / 3
Activity summary
IC50 unknown 190.00000000 nM
1 activity record(s) imported
InChIKey
PLZRYMRKNICVCA-UHFFFAOYSA-N
SMILES
COc1cc(CO)cc2[nH]c(=O)c3c(c12)NCCC3
Aliases
BDBM130186 (preferred) 8-(hydroxymethyl)-10-methoxy-2,3,4,6-tetrahydro-1H-benzo[h][1,6]naphthyridin-5-one (source_name) BDBM130186 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM130186 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM130186 Open - 10.7270/Q2SQ8Z3Z
PubChem CID58424867 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(CO)cc2[nH]c(=O)c3c(c12)NCCC3 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005642/BDB005642.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005642/BDB005642.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005642/BDB005642.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005642/BDB005642.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005642/BDB005642.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM130186 IC50 190 nM Moderate DOI: 10.7270/Q2SQ8Z3Z 1