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BDBM130193

E3L005649
Internal ID: BDB005649
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB005649/BDB005649.sdf
Basic Properties
Compound ID
E3L005649
Internal ID
BDB005649
Molecular formula
C13H15N3O
Molecular weight
229.283000
Exact mass
229.121512
XLogP
1.3449
TPSA
70.9100
HBA / HBD
3 / 3
Rotatable bonds
1
Heavy atoms / rings
17 / 3
Activity summary
IC50 unknown 170.00000000 nM
1 activity record(s) imported
InChIKey
HGXZCQVOJVVCSG-UHFFFAOYSA-N
SMILES
NCc1ccc2c3c(c(=O)[nH]c2c1)CCCN3
Aliases
BDBM130193 (preferred) 8-(aminomethyl)-2,3,4,6-tetrahydro-1H-benzo[h][1,6]naphthyridin-5-one (source_name) BDBM130193 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM130193 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM130193 Open - 10.7270/Q2SQ8Z3Z
PubChem CID58424958 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NCc1ccc2c3c(c(=O)[nH]c2c1)CCCN3 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB005649/BDB005649.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB005649/BDB005649.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB005649/BDB005649.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB005649/BDB005649.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB005649/BDB005649.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM130193 IC50 170 nM Moderate DOI: 10.7270/Q2SQ8Z3Z 1