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BDBM139639

E3L006061
Internal ID: BDB006061
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB006061/BDB006061.sdf
Basic Properties
Compound ID
E3L006061
Internal ID
BDB006061
Molecular formula
C17H19N5O3
Molecular weight
341.371000
Exact mass
341.148789
XLogP
1.2175
TPSA
91.8400
HBA / HBD
7 / 2
Rotatable bonds
2
Heavy atoms / rings
25 / 5
Activity summary
IC50 unknown 20.00000000 nM
1 activity record(s) imported
InChIKey
AFYHJNDSTIFCGW-UHFFFAOYSA-N
SMILES
O=c1[nH]nc2c3c(cccc13)N=C(CN1CCC3(CC1)OCCO3)N2
Aliases
BDBM139639 (preferred) 11-(1,4-Dioxa-8-azaspiro[4.5]decan-8-ylmethyl)-2,3,10,12-tetrazatricyclo[7.3.1.05,13]trideca-1,5(13),6,8,11-pentaen-4-one (source_name) BDBM139639 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM139639 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM139639 Open - 10.7270/Q21J98GF
PubChem CID135921298 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=c1[nH]nc2c3c(cccc13)N=C(CN1CCC3(CC1)OCCO3)N2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB006061/BDB006061.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB006061/BDB006061.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB006061/BDB006061.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB006061/BDB006061.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB006061/BDB006061.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM139639 IC50 20 nM High DOI: 10.7270/Q21J98GF 1