< Back to small molecule database

BDBM143657

E3L006280
Internal ID: BDB006280
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB006280/BDB006280.sdf
Basic Properties
Compound ID
E3L006280
Internal ID
BDB006280
Molecular formula
C26H23ClN8O3
Molecular weight
530.976000
Exact mass
530.158164
XLogP
3.7992
TPSA
141.8200
HBA / HBD
8 / 2
Rotatable bonds
6
Heavy atoms / rings
38 / 5
Activity summary
IC50 unknown 0.66100000 nM
1 activity record(s) imported
InChIKey
FYNWTBPRYFLVCU-UHFFFAOYSA-N
SMILES
CNc1ncc(-n2nc3c(c2C(C)C)C(c2ccc(C#N)cc2)N(c2cc(Cl)c[nH]c2=O)C3=O)c(OC)n1
Aliases
BDBM143657 (preferred) 4-[5-(5-chloro-2-oxo-1H-pyridin-3-yl)-2-[4-methoxy-2-(methylamino)pyrimidin-5-yl]-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-4-yl]benzonitrile (source_name) BDBM143657 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM143657 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM143657 Open - 10.7270/Q2K35SC8
PubChem CID89601418 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNc1ncc(-n2nc3c(c2C(C)C)C(c2ccc(C#N)cc2)N(c2cc(Cl)c[nH]c2=O)C3=O)c(OC)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB006280/BDB006280.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB006280/BDB006280.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB006280/BDB006280.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB006280/BDB006280.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB006280/BDB006280.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM143657 IC50 0.661 nM Very high DOI: 10.7270/Q2K35SC8 1