E3Docker 2.0

3-Bromo-N-[3-(1-pyrrolidinyl)propyl]benzamide

E3L006796

Internal ID: BDB006796

Activity data available Local docking-ready structure

Structure

/e3_file/ligand_db/generated/BDB006796/BDB006796.sdf

Basic Properties

Compound ID

E3L006796

Internal ID

BDB006796

Molecular formula

C14H19BrN2O

Molecular weight

311.223000

Exact mass

310.068075

XLogP

2.6648

TPSA

32.3400

HBA / HBD

2 / 1

Rotatable bonds

Heavy atoms / rings

18 / 2

Activity summary

IC50 > 100000.00000000 nM
4 activity record(s) imported

InChIKey

QERUYQVMWBYZRE-UHFFFAOYSA-N

SMILES

O=C(NCCCN1CCCC1)c1cccc(Br)c1

Aliases

BDBM154550 (preferred) 3-Bromo-N-[3-(1-pyrrolidinyl)propyl]benzamide (source_name) BDBM154550 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
O43189	PHF1;PCL1 PHD finger protein 1	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM154550	medium ; target=PHD finger protein 1
P29375	KDM5A;JARID1A;RBBP2;RBP2 Lysine-specific demethylase 5A	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM154550	medium ; target=Lysine-specific demethylase 5A
Q96T88	UHRF1;ICBP90;NP95;RNF106 E3 ubiquitin-protein ligase UHRF1	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM154550	medium ; target=E3 ubiquitin-protein ligase UHRF1
Q9BUL5	PHF23 PHD finger protein 23 (PDH-containing protein JUNE-1)	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM154550	medium ; target=PHD finger protein 23

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM154550	Open	-	10.1021/cb500956g PMID: 25590533
PubChem	CID60668607	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	O=C(NCCCN1CCCC1)c1cccc(Br)c1	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB006796/BDB006796.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB006796/BDB006796.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB006796/BDB006796.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB006796/BDB006796.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB006796/BDB006796.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
E3 ubiquitin-protein ligase UHRF1 Q96T88 E3 ligase component	BindingDB:BDBM154550	IC50	>100000 nM	Low	DOI: 10.1021/cb500956g PMID: 25590533	1
Lysine-specific demethylase 5A P29375 E3 ligase component	BindingDB:BDBM154550	IC50	>100000 nM	Low	DOI: 10.1021/cb500956g PMID: 25590533	1
PHD finger protein 1 O43189 E3 ligase component	BindingDB:BDBM154550	IC50	>100000 nM	Low	DOI: 10.1021/cb500956g PMID: 25590533	1
PHD finger protein 23 Q9BUL5 E3 ligase component	BindingDB:BDBM154550	IC50	>100000 nM	Low	DOI: 10.1021/cb500956g PMID: 25590533	1