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BDBM178172

E3L007682
Internal ID: BDB007682
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB007682/BDB007682.sdf
Basic Properties
Compound ID
E3L007682
Internal ID
BDB007682
Molecular formula
C23H30N6O3
Molecular weight
438.532000
Exact mass
438.237939
XLogP
0.6583
TPSA
110.6900
HBA / HBD
7 / 3
Rotatable bonds
7
Heavy atoms / rings
32 / 4
Activity summary
IC50 < 100.00000000 nM
1 activity record(s) imported
InChIKey
HJKNXHWUZZHQTG-ANYOKISRSA-N
SMILES
CC(=O)N1CCC(Nc2cc(C(=O)NC[C@H](O)CN3CCc4ccccc4C3)ncn2)C1
Aliases
BDBM178172 (preferred) 6-[(1-acetylpyrrolidin-3-yl)amino]-N-[(2S)-3-(3,4-dihydro-1H-isoquinolin-2-yl)-2-hydroxypropyl]pyrimidine-4-carboxamide (source_name) BDBM178172 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM178172 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM178172 Open - 10.7270/Q2RN3B7D
PubChem CID117685713 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)N1CCC(Nc2cc(C(=O)NC[C@H](O)CN3CCc4ccccc4C3)ncn2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB007682/BDB007682.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB007682/BDB007682.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB007682/BDB007682.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB007682/BDB007682.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB007682/BDB007682.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM178172 IC50 <100 nM High DOI: 10.7270/Q2RN3B7D 1