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BDBM178900

E3L007697
Internal ID: BDB007697
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB007697/BDB007697.sdf
Basic Properties
Compound ID
E3L007697
Internal ID
BDB007697
Molecular formula
C24H33N5O4S
Molecular weight
487.626000
Exact mass
487.225326
XLogP
1.0665
TPSA
114.8700
HBA / HBD
7 / 3
Rotatable bonds
8
Heavy atoms / rings
34 / 4
Activity summary
IC50 < 100.00000000 nM
1 activity record(s) imported
InChIKey
LYYIVPOKIUWWPE-QFIPXVFZSA-N
SMILES
CS(=O)(=O)N1CCC(Nc2cc(C(=O)NC[C@H](O)CN3CCc4ccccc4C3)ccn2)CC1
Aliases
BDBM178900 (preferred) N-[(2S)-3-(3,4-dihydro-1H-isoquinolin-2-yl)-2-hydroxypropyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyridine-4-carboxamide (source_name) BDBM178900 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM178900 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM178900 Open - 10.7270/Q2RN3B7D
PubChem CID117685855 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CS(=O)(=O)N1CCC(Nc2cc(C(=O)NC[C@H](O)CN3CCc4ccccc4C3)ccn2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB007697/BDB007697.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB007697/BDB007697.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB007697/BDB007697.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB007697/BDB007697.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB007697/BDB007697.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM178900 IC50 <100 nM High DOI: 10.7270/Q2RN3B7D 1