< Back to small molecule database

BDBM179250

E3L007763
Internal ID: BDB007763
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB007763/BDB007763.sdf
Basic Properties
Compound ID
E3L007763
Internal ID
BDB007763
Molecular formula
C24H33N5O3
Molecular weight
439.560000
Exact mass
439.258340
XLogP
1.1451
TPSA
89.0100
HBA / HBD
6 / 2
Rotatable bonds
9
Heavy atoms / rings
32 / 3
Activity summary
IC50 < 100.00000000 nM
1 activity record(s) imported
InChIKey
WMOOYYZQOYTFBP-QFIPXVFZSA-N
SMILES
CC(=O)N(C)CCN(C)c1cc(C(=O)NC[C@H](O)CN2CCc3ccccc3C2)ccn1
Aliases
BDBM179250 (preferred) 2-[2-[acetyl(methyl)amino]ethyl-methylamino]-N-[(2S)-3-(3,4-dihydro-1H-isoquinolin-2-yl)-2-hydroxypropyl]pyridine-4-carboxamide (source_name) BDBM179250 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM179250 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM179250 Open - 10.7270/Q2RN3B7D
PubChem CID117683215 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)N(C)CCN(C)c1cc(C(=O)NC[C@H](O)CN2CCc3ccccc3C2)ccn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB007763/BDB007763.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB007763/BDB007763.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB007763/BDB007763.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB007763/BDB007763.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB007763/BDB007763.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM179250 IC50 <100 nM High DOI: 10.7270/Q2RN3B7D 1