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BDBM179424

E3L007800
Internal ID: BDB007800
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB007800/BDB007800.sdf
Basic Properties
Compound ID
E3L007800
Internal ID
BDB007800
Molecular formula
C31H37N3O3
Molecular weight
499.655000
Exact mass
499.283492
XLogP
3.8790
TPSA
65.0400
HBA / HBD
5 / 2
Rotatable bonds
9
Heavy atoms / rings
37 / 5
Activity summary
IC50 < 100.00000000 nM
1 activity record(s) imported
InChIKey
PVLHIRIMLQLLFN-NDEPHWFRSA-N
SMILES
O=C(NC[C@H](O)CN1CCc2ccccc2C1)c1ccc(OC2CCN(Cc3ccccc3)CC2)cc1
Aliases
BDBM179424 (preferred) 4-(1-benzylpiperidin-4-yl)oxy-N-[(2S)-3-(3,4-dihydro-1H-isoquinolin-2-yl)-2-hydroxypropyl]benzamide (source_name) BDBM179424 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM179424 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM179424 Open - 10.7270/Q2RN3B7D
PubChem CID117683228 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(NC[C@H](O)CN1CCc2ccccc2C1)c1ccc(OC2CCN(Cc3ccccc3)CC2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB007800/BDB007800.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB007800/BDB007800.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB007800/BDB007800.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB007800/BDB007800.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB007800/BDB007800.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM179424 IC50 <100 nM High DOI: 10.7270/Q2RN3B7D 1