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BDBM184588

E3L007833
Internal ID: BDB007833
Activity data available Local docking-ready structure
Dock with P98170 Dock with Q13490
Structure
/e3_file/ligand_db/generated/BDB007833/BDB007833.sdf
Basic Properties
Compound ID
E3L007833
Internal ID
BDB007833
Molecular formula
C13H18N4O2
Molecular weight
262.313000
Exact mass
262.142976
XLogP
0.4234
TPSA
68.0600
HBA / HBD
3 / 2
Rotatable bonds
3
Heavy atoms / rings
19 / 2
Activity summary
IC50 unknown 55000.00000000 nM
2 activity record(s) imported
InChIKey
FNBMFCIZFNYJMI-QMMMGPOBSA-N
SMILES
CN[C@@H](C)C(=O)Nc1ccc2c(c1)n(C)c(=O)n2C
Aliases
BDBM184588 (preferred) (2S)-N-(1,3-dimethyl-2-oxobenzimidazol-5-yl)-2-(methylamino)propanamide (source_name) BDBM184588 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P98170 XIAP;API3;BIRC4;IAP3
E3 ubiquitin-protein ligase XIAP		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM184588 medium
; target=E3 ubiquitin-protein ligase XIAP
Q13490 BIRC2;API1;MIHB;RNF48
Baculoviral IAP repeat-containing protein 2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM184588 medium
; target=Baculoviral IAP repeat-containing protein 2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM184588 Open - 10.7270/Q2TH8KGK
PubChem CID89970323 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN[C@@H](C)C(=O)Nc1ccc2c(c1)n(C)c(=O)n2C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB007833/BDB007833.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB007833/BDB007833.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB007833/BDB007833.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB007833/BDB007833.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB007833/BDB007833.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Baculoviral IAP repeat-containing protein 2
Q13490
E3 ligase component 		BindingDB:BDBM184588 IC50 55000 nM Low DOI: 10.7270/Q2TH8KGK 1
E3 ubiquitin-protein ligase XIAP
P98170
E3 ligase component 		BindingDB:BDBM184588 IC50 55000 nM Low DOI: 10.7270/Q2TH8KGK 1