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BDBM206026

E3L008321
Internal ID: BDB008321
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB008321/BDB008321.sdf
Basic Properties
Compound ID
E3L008321
Internal ID
BDB008321
Molecular formula
C45H53F2N9O3
Molecular weight
805.975000
Exact mass
805.423943
XLogP
6.0663
TPSA
124.3900
HBA / HBD
8 / 2
Rotatable bonds
8
Heavy atoms / rings
59 / 10
Activity summary
IC50 unknown 275.00000000 nM
2 activity record(s) imported
InChIKey
KIRYOWGBLGLINP-BNTARQHMSA-N
SMILES
C[C@@H]1Cc2c([nH]c3ccccc23)[C@@H](c2cnc(N3CCC4(CC3)CC(CN3CCC(c5ccc6c(c5)n(C)c(=O)n6C5CCC(=O)NC5=O)CC3)C4)nc2)N1CC(F)F
Aliases
BDBM206026 (preferred) BDBM206026 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM206026 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM206026 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM206026 Open - 10.7270/Q2QZ2GSN
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H]1Cc2c([nH]c3ccccc23)[C@@H](c2cnc(N3CCC4(CC3)CC(CN3CCC(c5ccc6c(c5)n(C)c(=O)n6C5CCC(=O)NC5=O)CC3)C4)nc2)N1CC(F)F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB008321/BDB008321.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB008321/BDB008321.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB008321/BDB008321.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB008321/BDB008321.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB008321/BDB008321.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM206026 IC50 275 nM Moderate DOI: 10.7270/Q2QZ2GSN 2 source records