< Back to small molecule database

BDBM207597

E3L008450
Internal ID: BDB008450
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB008450/BDB008450.sdf
Basic Properties
Compound ID
E3L008450
Internal ID
BDB008450
Molecular formula
C12H10N4O
Molecular weight
226.239000
Exact mass
226.085461
XLogP
0.7186
TPSA
69.2800
HBA / HBD
3 / 3
Rotatable bonds
0
Heavy atoms / rings
17 / 4
Activity summary
EC50 unknown 6.90000000 nM
5 activity record(s) imported
InChIKey
UDDKBUNBKDWDBU-UHFFFAOYSA-N
SMILES
O=C1NN=C2CNCc3[nH]c4cccc1c4c32
Aliases
BDBM207597 (preferred) 2,3,4,9-Tetrahydro-2,4,9,10-tetraazacyclohepta[def]fluoren-8(1H)-one (source_name) BDBM207597 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM207597 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM207597 Open - 10.7270/Q2QV3KBD; 10.7270/Q2CN75ZV; 10.7270/Q2Z89FS5; 10.1021/acs.jmedchem.0c01346 PMID: 33264017
PubChem CID136242912 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1NN=C2CNCc3[nH]c4cccc1c4c32 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB008450/BDB008450.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB008450/BDB008450.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB008450/BDB008450.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB008450/BDB008450.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB008450/BDB008450.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM207597 IC50 10000 nM Low DOI: 10.7270/Q2Z89FS5 1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM207597 IC50 16 nM High DOI: 10.7270/Q2QV3KBD 1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM207597 IC50 16000 nM Low DOI: 10.7270/Q2CN75ZV 1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM207597 IC50 16 nM High DOI: 10.1021/acs.jmedchem.0c01346
PMID: 33264017 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM207597 EC50 6.9 nM Very high DOI: 10.1021/acs.jmedchem.0c01346
PMID: 33264017 		1