< Back to small molecule database

BDBM214662

E3L009526
Internal ID: BDB009526
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB009526/BDB009526.sdf
Basic Properties
Compound ID
E3L009526
Internal ID
BDB009526
Molecular formula
C27H25ClF3N5O2
Molecular weight
543.977000
Exact mass
543.164887
XLogP
6.8209
TPSA
92.9300
HBA / HBD
5 / 2
Rotatable bonds
7
Heavy atoms / rings
38 / 5
Activity summary
IC50 unknown 524.00000000 nM
1 activity record(s) imported
InChIKey
QXCOSKRZFKKODQ-OAHLLOKOSA-N
SMILES
Cc1ccc(Cl)cc1-c1nc2nc(C(=O)O)nc(N[C@H](C)C3CCC3)c2n1Cc1ccc(C(F)(F)F)cc1
Aliases
BDBM214662 (preferred) 8-(5-Chloro-2-methylphenyl)-6-{[(1r)-1-cyclobutylethyl]amino}-7-[4-(trifluoromethyl)benzyl]-7h-purine-2-carboxylic acid (source_name) BDBM214662 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2
reported_binder bindingdb_reported Yes No low BindingDB:BDBM214662 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM214662 Open - 10.7270/Q2RF5X1F
PubChem CID90325348 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(Cl)cc1-c1nc2nc(C(=O)O)nc(N[C@H](C)C3CCC3)c2n1Cc1ccc(C(F)(F)F)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB009526/BDB009526.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB009526/BDB009526.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB009526/BDB009526.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB009526/BDB009526.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB009526/BDB009526.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component
BindingDB:BDBM214662 IC50 524 nM Moderate DOI: 10.7270/Q2RF5X1F 1