< Back to small molecule database

BDBM215113

E3L009603
Internal ID: BDB009603
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB009603/BDB009603.sdf
Basic Properties
Compound ID
E3L009603
Internal ID
BDB009603
Molecular formula
C21H21Cl2NO3S
Molecular weight
438.376000
Exact mass
437.061920
XLogP
5.6130
TPSA
57.6100
HBA / HBD
3 / 1
Rotatable bonds
6
Heavy atoms / rings
28 / 4
Activity summary
IC50 unknown 220.00000000 nM
1 activity record(s) imported
InChIKey
MJSFAHMLRXGLQG-VXCCZKMHSA-N
SMILES
O=C(O)C[C@@H]1CC(c2cccc(Cl)c2)[C@@H](c2ccc(Cl)s2)N(CC2CC2)C1=O
Aliases
BDBM215113 (preferred) 2-[(3S,6S)-5-(3-chlorophenyl)-6-(5-chlorothiophen-2-yl)-1-(cyclopropylmethyl)-2-oxopiperidin-3-yl]acetic acid (source_name) BDBM215113 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM215113 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM215113 Open - 10.7270/Q29022M2
PubChem CID117656722 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)C[C@@H]1CC(c2cccc(Cl)c2)[C@@H](c2ccc(Cl)s2)N(CC2CC2)C1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB009603/BDB009603.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB009603/BDB009603.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB009603/BDB009603.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB009603/BDB009603.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB009603/BDB009603.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM215113 IC50 220 nM Moderate DOI: 10.7270/Q29022M2 1