< Back to small molecule database

BDBM218190

E3L009960
Internal ID: BDB009960
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB009960/BDB009960.sdf
Basic Properties
Compound ID
E3L009960
Internal ID
BDB009960
Molecular formula
C25H20Cl2F3N5O2
Molecular weight
550.368000
Exact mass
549.094615
XLogP
6.7758
TPSA
92.9300
HBA / HBD
5 / 2
Rotatable bonds
7
Heavy atoms / rings
37 / 5
Activity summary
IC50 unknown 213.00000000 nM
1 activity record(s) imported
InChIKey
YXGLEOQIMHVVQB-GFCCVEGCSA-N
SMILES
C[C@@H](Nc1nc(C(=O)O)nc2nc(-c3ccc(Cl)cc3Cl)n(Cc3ccc(C(F)(F)F)cc3)c12)C1CC1
Aliases
BDBM218190 (preferred) 6-{[(1r)-1-Cyclopropyl-ethyl]amino}-8-(2,4-dichloro-phenyl)-7-[4-(trifluoromethyl) benzyl]-7h-purine-2-carboxylic acid (source_name) BDBM218190 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM218190 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM218190 Open - 10.7270/Q2RF5X1F
PubChem CID90324952 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H](Nc1nc(C(=O)O)nc2nc(-c3ccc(Cl)cc3Cl)n(Cc3ccc(C(F)(F)F)cc3)c12)C1CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB009960/BDB009960.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB009960/BDB009960.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB009960/BDB009960.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB009960/BDB009960.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB009960/BDB009960.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM218190 IC50 213 nM Moderate DOI: 10.7270/Q2RF5X1F 1