< Back to small molecule database

BDBM236373

E3L011323
Internal ID: BDB011323
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB011323/BDB011323.sdf
Basic Properties
Compound ID
E3L011323
Internal ID
BDB011323
Molecular formula
C27H23ClN6O4
Molecular weight
530.972000
Exact mass
530.146931
XLogP
4.5064
TPSA
126.1300
HBA / HBD
7 / 1
Rotatable bonds
6
Heavy atoms / rings
38 / 5
Activity summary
IC50 unknown 0.77900000 nM
1 activity record(s) imported
InChIKey
XTAZIILNJPYNBS-UHFFFAOYSA-N
SMILES
COc1ncc(-c2cc3c(n2C(C)C)C(c2ccc(C#N)cc2)N(c2cc(Cl)c[nH]c2=O)C3=O)c(OC)n1
Aliases
BDBM236373 (preferred) 4-[5-(5-chloro-2-oxo-1H-pyridin-3-yl)-2-(2,4-dimethoxypyrimidin-5-yl)-4-oxo-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-6-yl]benzonitrile (source_name) BDBM236373 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM236373 medium
; target=Cellular tumor antigen p53
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM236373 Open - 10.7270/Q2DN43XR
PubChem CID90016259 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ncc(-c2cc3c(n2C(C)C)C(c2ccc(C#N)cc2)N(c2cc(Cl)c[nH]c2=O)C3=O)c(OC)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB011323/BDB011323.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB011323/BDB011323.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB011323/BDB011323.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB011323/BDB011323.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB011323/BDB011323.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cellular tumor antigen p53
Q00987
E3 ligase component 		BindingDB:BDBM236373 IC50 0.779 nM Very high DOI: 10.7270/Q2DN43XR 1