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BDBM236384

E3L011334
Internal ID: BDB011334
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB011334/BDB011334.sdf
Basic Properties
Compound ID
E3L011334
Internal ID
BDB011334
Molecular formula
C27H24ClN7O3
Molecular weight
529.988000
Exact mass
529.162915
XLogP
4.5395
TPSA
128.9300
HBA / HBD
7 / 2
Rotatable bonds
6
Heavy atoms / rings
38 / 5
Activity summary
IC50 unknown 0.32100000 nM
1 activity record(s) imported
InChIKey
YYGAPUHEYRIFSS-UHFFFAOYSA-N
SMILES
CNc1ncc(-c2cc3c(n2C(C)C)C(c2ccc(C#N)cc2)N(c2c[nH]c(=O)c(Cl)c2)C3=O)c(OC)n1
Aliases
BDBM236384 (preferred) 4-[5-(5-chloro-6-oxo-1H-pyridin-3-yl)-2-[4-methoxy-2-(methylamino)pyrimidin-5-yl]-4-oxo-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-6-yl]benzonitrile (source_name) BDBM236384 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM236384 medium
; target=Cellular tumor antigen p53
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM236384 Open - 10.7270/Q2DN43XR
PubChem CID90015807 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNc1ncc(-c2cc3c(n2C(C)C)C(c2ccc(C#N)cc2)N(c2c[nH]c(=O)c(Cl)c2)C3=O)c(OC)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB011334/BDB011334.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB011334/BDB011334.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB011334/BDB011334.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB011334/BDB011334.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB011334/BDB011334.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cellular tumor antigen p53
Q00987
E3 ligase component 		BindingDB:BDBM236384 IC50 0.321 nM Very high DOI: 10.7270/Q2DN43XR 1