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BDBM241700

E3L011740
Internal ID: BDB011740
Activity data available Local docking-ready structure
Dock with P98170
Structure
/e3_file/ligand_db/generated/BDB011740/BDB011740.sdf
Basic Properties
Compound ID
E3L011740
Internal ID
BDB011740
Molecular formula
C36H42N4O4
Molecular weight
594.756000
Exact mass
594.320606
XLogP
5.0373
TPSA
90.9800
HBA / HBD
5 / 2
Rotatable bonds
8
Heavy atoms / rings
44 / 8
Activity summary
IC50 unknown 278.00000000 nM
2 activity record(s) imported
InChIKey
ROIZRCWZUQNFED-WQJYIYLMSA-N
SMILES
CN[C@@H](C)C(=O)NC1C(=O)N(Cc2c(OC)ccc3ccccc23)c2ccccc2N(CC23CC4CC(CC(C4)C2)C3)C1=O
Aliases
BDBM241700 (preferred) (2S)-N-[5-(1-adamantylmethyl)-1-[(2-methoxynaphthalen-1-yl)methyl]-2,4-dioxo-1,5-benzodiazepin-3-yl]-2-(methylamino)propanamide (source_name) BDBM241700 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P98170 XIAP;API3;BIRC4;IAP3
E3 ubiquitin-protein ligase XIAP		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM241700 medium
; target=E3 ubiquitin-protein ligase XIAP
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM241700 Open - 10.7270/Q2W097X3
PubChem CID122531373 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN[C@@H](C)C(=O)NC1C(=O)N(Cc2c(OC)ccc3ccccc23)c2ccccc2N(CC23CC4CC(CC(C4)C2)C3)C1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB011740/BDB011740.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB011740/BDB011740.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB011740/BDB011740.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB011740/BDB011740.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB011740/BDB011740.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase XIAP
P98170
E3 ligase component 		BindingDB:BDBM241700 IC50 >54800 nM Low DOI: 10.7270/Q2W097X3 1
E3 ubiquitin-protein ligase XIAP
P98170
E3 ligase component 		BindingDB:BDBM241700 IC50 278 nM Moderate DOI: 10.7270/Q2W097X3 1