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BDBM253994

E3L012049

Internal ID: BDB012049

Activity data available Local docking-ready structure

Dock with P98170 Dock with Q13490

Structure

/e3_file/ligand_db/generated/BDB012049/BDB012049.sdf

Basic Properties

Compound ID

E3L012049

Internal ID

BDB012049

Molecular formula

C33H30N8O

Molecular weight

554.658000

Exact mass

554.254258

XLogP

4.9080

TPSA

102.0300

HBA / HBD

6 / 2

Rotatable bonds

Heavy atoms / rings

42 / 6

Activity summary

IC50 unknown 1.00000000 nM
2 activity record(s) imported

InChIKey

MKBRPDBPQLDLIT-QFIPXVFZSA-N

SMILES

CN[C@@H](C)C(=O)Nc1ccc(-c2c(-c3cncn3C)nc3cc(C)ccn23)c(C#Cc2ccc3c(C)nccc3c2)n1

Aliases

BDBM253994 (preferred) (2S)-2-(methylamino)-N-[6-[2-(1-methylisoquinolin-6-yl)ethynyl]-5-[7-methyl-2-(3-methylimidazol-4-yl)imidazo[1,2-a]pyridin-3-yl]-2-pyridinyl]propanamide (source_name) BDBM253994 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
P98170	XIAP;API3;BIRC4;IAP3 E3 ubiquitin-protein ligase XIAP	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM253994	medium ; target=E3 ubiquitin-protein ligase XIAP
Q13490	BIRC2;API1;MIHB;RNF48 Baculoviral IAP repeat-containing protein 2	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM253994	medium ; target=Baculoviral IAP repeat-containing protein 2

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM253994	Open	-	10.7270/Q24M93G0
PubChem	CID118863034	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	CN[C@@H](C)C(=O)Nc1ccc(-c2c(-c3cncn3C)nc3cc(C)ccn23)c(C#Cc2ccc3c(C)nccc3c2)n1	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB012049/BDB012049.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB012049/BDB012049.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB012049/BDB012049.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB012049/BDB012049.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB012049/BDB012049.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
Baculoviral IAP repeat-containing protein 2 Q13490 E3 ligase component	BindingDB:BDBM253994	IC50	1 nM	Very high	DOI: 10.7270/Q24M93G0	1
E3 ubiquitin-protein ligase XIAP P98170 E3 ligase component	BindingDB:BDBM253994	IC50	303 nM	Moderate	DOI: 10.7270/Q24M93G0	1