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BDBM264003

E3L012334
Internal ID: BDB012334
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012334/BDB012334.sdf
Basic Properties
Compound ID
E3L012334
Internal ID
BDB012334
Molecular formula
C19H17N3O3
Molecular weight
335.363000
Exact mass
335.126991
XLogP
3.4219
TPSA
77.2400
HBA / HBD
4 / 1
Rotatable bonds
6
Heavy atoms / rings
25 / 4
Activity summary
IC50 < 100.00000000 nM
2 activity record(s) imported
InChIKey
YSLNSTXNXMRWMU-UHFFFAOYSA-N
SMILES
O=C(O)c1ccnc(-n2nccc2OCc2ccc(C3CC3)cc2)c1
Aliases
BDBM264003 (preferred) 2-{5-[(4-cyclopropylbenzyl)oxy]-1H-pyrazol-1-yl}pyridine-4-carboxylic acid (source_name) BDBM264003 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM264003 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM264003 Open - 10.7270/Q29Z9762; 10.1016/j.bmcl.2018.03.083 PMID: 29627262
PubChem CID90204958 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccnc(-n2nccc2OCc2ccc(C3CC3)cc2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012334/BDB012334.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012334/BDB012334.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012334/BDB012334.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012334/BDB012334.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012334/BDB012334.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM264003 IC50 250 nM Moderate DOI: 10.1016/j.bmcl.2018.03.083
PMID: 29627262 		1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM264003 IC50 <100 nM High DOI: 10.7270/Q29Z9762 1