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BDBM264031

E3L012359
Internal ID: BDB012359
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012359/BDB012359.sdf
Basic Properties
Compound ID
E3L012359
Internal ID
BDB012359
Molecular formula
C19H18ClN3O5
Molecular weight
403.822000
Exact mass
403.093498
XLogP
3.2231
TPSA
95.7000
HBA / HBD
6 / 1
Rotatable bonds
9
Heavy atoms / rings
28 / 3
Activity summary
IC50 < 100.00000000 nM
1 activity record(s) imported
InChIKey
ZSYSQOMASXIARJ-UHFFFAOYSA-N
SMILES
COCCOc1cc(Cl)ccc1COc1ccnn1-c1cc(C(=O)O)ccn1
Aliases
BDBM264031 (preferred) 2-[5-[[4-Chloro-2-(2-methoxyethoxy)phenyl]methoxy] pyrazol-1-yl]pyridine-4-carboxylic acid (source_name) BDBM264031 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM264031 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM264031 Open - 10.7270/Q29Z9762
PubChem CID90205092 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COCCOc1cc(Cl)ccc1COc1ccnn1-c1cc(C(=O)O)ccn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012359/BDB012359.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012359/BDB012359.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012359/BDB012359.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012359/BDB012359.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012359/BDB012359.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM264031 IC50 <100 nM High DOI: 10.7270/Q29Z9762 1