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BDBM264039

E3L012367
Internal ID: BDB012367
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012367/BDB012367.sdf
Basic Properties
Compound ID
E3L012367
Internal ID
BDB012367
Molecular formula
C20H19N3O4
Molecular weight
365.389000
Exact mass
365.137556
XLogP
3.2580
TPSA
86.4700
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
27 / 4
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
XUYSGGCAQKHJKY-UHFFFAOYSA-N
SMILES
CC1(C)Cc2cccc(COc3ccnn3-c3cc(C(=O)O)ccn3)c2O1
Aliases
BDBM264039 (preferred) 2-[5-[(2,2-dimethyl-3H-1-benzofuran-7-yl)methoxy]pyrazol-1-yl]pyridine-4-carboxylic acid (source_name) BDBM264039 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM264039 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM264039 Open - 10.7270/Q29Z9762
PubChem CID90205124 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC1(C)Cc2cccc(COc3ccnn3-c3cc(C(=O)O)ccn3)c2O1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012367/BDB012367.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012367/BDB012367.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012367/BDB012367.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012367/BDB012367.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012367/BDB012367.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM264039 IC50 550 nM Moderate DOI: 10.7270/Q29Z9762 1