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BDBM264048

E3L012376
Internal ID: BDB012376
Activity data available Local docking-ready structure
Dock with P29375 Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB012376/BDB012376.sdf
Basic Properties
Compound ID
E3L012376
Internal ID
BDB012376
Molecular formula
C18H17N3O4
Molecular weight
339.351000
Exact mass
339.121906
XLogP
2.8615
TPSA
86.4700
HBA / HBD
5 / 1
Rotatable bonds
6
Heavy atoms / rings
25 / 3
Activity summary
IC50 < 100.00000000 nM
2 activity record(s) imported
InChIKey
WAPIESSEOAYVNJ-UHFFFAOYSA-N
SMILES
COc1cc(C)ccc1COc1ccnn1-c1cc(C(=O)O)ccn1
Aliases
BDBM264048 (preferred) 2-[5-[(2-Methoxy-4-methylphenyl)methoxy]pyrazol-1-yl]pyridine-4-carboxylic acid (source_name) BDBM264048 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM264048 medium
; target=Lysine-specific demethylase 5A
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM264048 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM264048 Open - 10.7270/Q29Z9762
PubChem CID90204780 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(C)ccc1COc1ccnn1-c1cc(C(=O)O)ccn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012376/BDB012376.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012376/BDB012376.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012376/BDB012376.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012376/BDB012376.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012376/BDB012376.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM264048 IC50 5500 nM Low DOI: 10.7270/Q29Z9762 1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM264048 IC50 <100 nM High DOI: 10.7270/Q29Z9762 1