< Back to small molecule database

BDBM264061

E3L012389
Internal ID: BDB012389
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012389/BDB012389.sdf
Basic Properties
Compound ID
E3L012389
Internal ID
BDB012389
Molecular formula
C18H14FN3O3
Molecular weight
339.326000
Exact mass
339.101920
XLogP
3.1709
TPSA
77.2400
HBA / HBD
4 / 1
Rotatable bonds
4
Heavy atoms / rings
25 / 4
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
ZPFAMOBPFNYKFI-UHFFFAOYSA-N
SMILES
O=C(O)c1ccnc(-n2nccc2OC2CCc3cc(F)ccc32)c1
Aliases
BDBM264061 (preferred) 2-[5-[(5-fluoro-2,3-dihydro-1H-inden-1-yl)oxy]pyrazol-1-yl]pyridine-4-carboxylic acid (source_name) BDBM264061 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM264061 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM264061 Open - 10.7270/Q29Z9762
PubChem CID90204945 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccnc(-n2nccc2OC2CCc3cc(F)ccc32)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012389/BDB012389.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012389/BDB012389.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012389/BDB012389.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012389/BDB012389.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012389/BDB012389.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM264061 IC50 550 nM Moderate DOI: 10.7270/Q29Z9762 1