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BDBM264062

E3L012390
Internal ID: BDB012390
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012390/BDB012390.sdf
Basic Properties
Compound ID
E3L012390
Internal ID
BDB012390
Molecular formula
C18H14ClN3O3
Molecular weight
355.781000
Exact mass
355.072369
XLogP
3.6852
TPSA
77.2400
HBA / HBD
4 / 1
Rotatable bonds
4
Heavy atoms / rings
25 / 4
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
NFVXMQNDOGMBRE-UHFFFAOYSA-N
SMILES
O=C(O)c1ccnc(-n2nccc2OC2CCc3cc(Cl)ccc32)c1
Aliases
BDBM264062 (preferred) 2-[5-[(5-chloro-2,3-dihydro-1H-inden-1-yl)oxy]pyrazol-1-yl]pyridine-4-carboxylic acid (source_name) BDBM264062 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM264062 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM264062 Open - 10.7270/Q29Z9762
PubChem CID90205146 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccnc(-n2nccc2OC2CCc3cc(Cl)ccc32)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012390/BDB012390.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012390/BDB012390.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012390/BDB012390.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012390/BDB012390.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012390/BDB012390.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM264062 IC50 550 nM Moderate DOI: 10.7270/Q29Z9762 1