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US10040779, Example 56

E3L012707
Internal ID: BDB012707
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012707/BDB012707.sdf
Basic Properties
Compound ID
E3L012707
Internal ID
BDB012707
Molecular formula
C19H20FN5O3
Molecular weight
385.399000
Exact mass
385.155018
XLogP
2.3444
TPSA
92.5100
HBA / HBD
6 / 2
Rotatable bonds
6
Heavy atoms / rings
28 / 4
Activity summary
IC50 < 100.00000000 nM
1 activity record(s) imported
InChIKey
OSXWYQZVDLLCFQ-UHFFFAOYSA-N
SMILES
O=C(O)c1ccncc1Nc1nn(CCN2CCOCC2)c2ccc(F)cc12
Aliases
BDBM277759 (preferred) US10040779, Example 56 (source_name) BDBM277759 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM277759 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM277759 Open - 10.7270/Q2571FBT
PubChem CID76283755 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccncc1Nc1nn(CCN2CCOCC2)c2ccc(F)cc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012707/BDB012707.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012707/BDB012707.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012707/BDB012707.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012707/BDB012707.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012707/BDB012707.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM277759 IC50 <100 nM High DOI: 10.7270/Q2571FBT 1