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US10040779, Example 63

E3L012714
Internal ID: BDB012714
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012714/BDB012714.sdf
Basic Properties
Compound ID
E3L012714
Internal ID
BDB012714
Molecular formula
C18H17FN4O3
Molecular weight
356.357000
Exact mass
356.128469
XLogP
3.3637
TPSA
89.2700
HBA / HBD
5 / 2
Rotatable bonds
4
Heavy atoms / rings
26 / 4
Activity summary
IC50 < 100.00000000 nM
1 activity record(s) imported
InChIKey
RMBFTWHBPWJTQR-UHFFFAOYSA-N
SMILES
O=C(O)c1ccncc1Nc1nn(C2CCCOC2)c2ccc(F)cc12
Aliases
BDBM277766 (preferred) US10040779, Example 63 (source_name) BDBM277766 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM277766 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM277766 Open - 10.7270/Q2571FBT
PubChem CID90217144 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccncc1Nc1nn(C2CCCOC2)c2ccc(F)cc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012714/BDB012714.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012714/BDB012714.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012714/BDB012714.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012714/BDB012714.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012714/BDB012714.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM277766 IC50 <100 nM High DOI: 10.7270/Q2571FBT 1