< Back to small molecule database

US10022354, Example 115

E3L012777
Internal ID: BDB012777
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012777/BDB012777.sdf
Basic Properties
Compound ID
E3L012777
Internal ID
BDB012777
Molecular formula
C13H20N4O3
Molecular weight
280.328000
Exact mass
280.153540
XLogP
1.1036
TPSA
87.3200
HBA / HBD
4 / 2
Rotatable bonds
3
Heavy atoms / rings
20 / 2
Activity summary
IC50 unknown 0.59000000 nM
2 activity record(s) imported
InChIKey
GXQMLAWTGOHRJK-UHFFFAOYSA-N
SMILES
COC(=O)NC1CCN(C(=O)c2cc(C(C)C)n[nH]2)C1
Aliases
BDBM281091 (preferred) US10022354, Example 115 (source_name) BDBM281091 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM281091 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM281091 Open - 10.7270/Q2PC34F7
PubChem CID121279560 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COC(=O)NC1CCN(C(=O)c2cc(C(C)C)n[nH]2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012777/BDB012777.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012777/BDB012777.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012777/BDB012777.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012777/BDB012777.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012777/BDB012777.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM281091 IC50 0.59 nM Very high DOI: 10.7270/Q2PC34F7 2 source records