< Back to small molecule database

US10022354, Example 48

E3L012794
Internal ID: BDB012794
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012794/BDB012794.sdf
Basic Properties
Compound ID
E3L012794
Internal ID
BDB012794
Molecular formula
C22H28N6O
Molecular weight
392.507000
Exact mass
392.232460
XLogP
3.4408
TPSA
79.7000
HBA / HBD
4 / 1
Rotatable bonds
3
Heavy atoms / rings
29 / 4
Activity summary
IC50 unknown 0.90000000 nM
2 activity record(s) imported
InChIKey
ZERBYEGVAVBBON-UHFFFAOYSA-N
SMILES
Cc1cc(-c2cnn(C)c2)cc(C2CCN(C(=O)c3cc(C(C)(C)C)n[nH]3)C2)n1
Aliases
BDBM281108 (preferred) US10022354, Example 48 (source_name) BDBM281108 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM281108 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM281108 Open - 10.7270/Q2PC34F7; 10.1016/j.bmcl.2017.05.016 PMID: 28512031
PubChem CID121279687 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(-c2cnn(C)c2)cc(C2CCN(C(=O)c3cc(C(C)(C)C)n[nH]3)C2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012794/BDB012794.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012794/BDB012794.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012794/BDB012794.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012794/BDB012794.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012794/BDB012794.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM281108 IC50 897 nM Moderate DOI: 10.1016/j.bmcl.2017.05.016
PMID: 28512031 		1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM281108 IC50 0.9 nM Very high DOI: 10.7270/Q2PC34F7 1