< Back to small molecule database

US10022354, Example 51

E3L012797
Internal ID: BDB012797
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012797/BDB012797.sdf
Basic Properties
Compound ID
E3L012797
Internal ID
BDB012797
Molecular formula
C17H22N4O
Molecular weight
298.390000
Exact mass
298.179361
XLogP
2.8662
TPSA
61.8800
HBA / HBD
3 / 1
Rotatable bonds
3
Heavy atoms / rings
22 / 3
Activity summary
IC50 unknown 2.40000000 nM
1 activity record(s) imported
InChIKey
NHBZYMIMOIDLJM-UHFFFAOYSA-N
SMILES
Cc1cccc(C2CCN(C(=O)c3cc(C(C)C)n[nH]3)C2)n1
Aliases
BDBM281111 (preferred) US10022354, Example 51 (source_name) BDBM281111 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM281111 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM281111 Open - 10.7270/Q2PC34F7
PubChem CID121279688 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cccc(C2CCN(C(=O)c3cc(C(C)C)n[nH]3)C2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012797/BDB012797.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012797/BDB012797.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012797/BDB012797.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012797/BDB012797.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012797/BDB012797.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM281111 IC50 2.4 nM Very high DOI: 10.7270/Q2PC34F7 1