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US10022354, Example 57

E3L012803
Internal ID: BDB012803
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012803/BDB012803.sdf
Basic Properties
Compound ID
E3L012803
Internal ID
BDB012803
Molecular formula
C23H27N5O3S
Molecular weight
453.568000
Exact mass
453.183461
XLogP
3.6670
TPSA
108.0500
HBA / HBD
5 / 2
Rotatable bonds
6
Heavy atoms / rings
32 / 4
Activity summary
IC50 unknown 17.00000000 nM
1 activity record(s) imported
InChIKey
PJUURNQOAWVMOA-UHFFFAOYSA-N
SMILES
Cc1cc(NS(=O)(=O)c2ccccc2)cc(C2CCN(C(=O)c3cc(C(C)C)n[nH]3)C2)n1
Aliases
BDBM281117 (preferred) US10022354, Example 57 (source_name) BDBM281117 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A
reported_binder bindingdb_reported Yes No low BindingDB:BDBM281117 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM281117 Open - 10.7270/Q2PC34F7
PubChem CID121279683 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(NS(=O)(=O)c2ccccc2)cc(C2CCN(C(=O)c3cc(C(C)C)n[nH]3)C2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012803/BDB012803.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012803/BDB012803.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012803/BDB012803.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012803/BDB012803.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012803/BDB012803.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component
BindingDB:BDBM281117 IC50 17 nM High DOI: 10.7270/Q2PC34F7 1