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US10022354, Example 61

E3L012807
Internal ID: BDB012807
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012807/BDB012807.sdf
Basic Properties
Compound ID
E3L012807
Internal ID
BDB012807
Molecular formula
C24H28N4O
Molecular weight
388.515000
Exact mass
388.226312
XLogP
4.8416
TPSA
61.8800
HBA / HBD
3 / 1
Rotatable bonds
4
Heavy atoms / rings
29 / 4
Activity summary
IC50 unknown 0.12000000 nM
2 activity record(s) imported
InChIKey
DWKIUDZFZWEOFL-UHFFFAOYSA-N
SMILES
Cc1cccc(-c2cc(C)nc(C3CCN(C(=O)c4cc(C(C)C)n[nH]4)C3)c2)c1
Aliases
BDBM281121 (preferred) US10022354, Example 61 (source_name) BDBM281121 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM281121 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM281121 Open - 10.7270/Q2PC34F7; 10.1016/j.bmcl.2017.05.016 PMID: 28512031
PubChem CID121279700 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cccc(-c2cc(C)nc(C3CCN(C(=O)c4cc(C(C)C)n[nH]4)C3)c2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012807/BDB012807.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012807/BDB012807.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012807/BDB012807.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012807/BDB012807.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012807/BDB012807.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM281121 IC50 0.12 nM Very high DOI: 10.7270/Q2PC34F7 1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM281121 IC50 122 nM Moderate DOI: 10.1016/j.bmcl.2017.05.016
PMID: 28512031 		1