< Back to small molecule database

US10022354, Example 97

E3L012843
Internal ID: BDB012843
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012843/BDB012843.sdf
Basic Properties
Compound ID
E3L012843
Internal ID
BDB012843
Molecular formula
C23H30N6O
Molecular weight
406.534000
Exact mass
406.248110
XLogP
4.3106
TPSA
79.7000
HBA / HBD
4 / 1
Rotatable bonds
5
Heavy atoms / rings
30 / 4
Activity summary
IC50 unknown 0.50000000 nM
1 activity record(s) imported
InChIKey
SQYCWHKVLJNNCM-UHFFFAOYSA-N
SMILES
Cc1cc(-c2cnn(C(C)C)c2)cc(C2CCN(C(=O)c3cc(C(C)C)n[nH]3)C2)n1
Aliases
BDBM281157 (preferred) US10022354, Example 97 (source_name) BDBM281157 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM281157 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM281157 Open - 10.7270/Q2PC34F7
PubChem CID121279632 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(-c2cnn(C(C)C)c2)cc(C2CCN(C(=O)c3cc(C(C)C)n[nH]3)C2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012843/BDB012843.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012843/BDB012843.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012843/BDB012843.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012843/BDB012843.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012843/BDB012843.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM281157 IC50 0.5 nM Very high DOI: 10.7270/Q2PC34F7 1