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US10022354, Example 160

E3L012904
Internal ID: BDB012904
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012904/BDB012904.sdf
Basic Properties
Compound ID
E3L012904
Internal ID
BDB012904
Molecular formula
C19H24N4O3
Molecular weight
356.426000
Exact mass
356.184841
XLogP
2.1862
TPSA
87.3200
HBA / HBD
4 / 2
Rotatable bonds
5
Heavy atoms / rings
26 / 3
Activity summary
IC50 unknown 0.27000000 nM
1 activity record(s) imported
InChIKey
RKLRLFSURNRUDP-UHFFFAOYSA-N
SMILES
COc1ccc(C(=O)NC2CCN(C(=O)c3cc(C(C)C)n[nH]3)C2)cc1
Aliases
BDBM281220 (preferred) US10022354, Example 160 (source_name) BDBM281220 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM281220 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM281220 Open - 10.7270/Q2PC34F7
PubChem CID121279435 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc(C(=O)NC2CCN(C(=O)c3cc(C(C)C)n[nH]3)C2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012904/BDB012904.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012904/BDB012904.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012904/BDB012904.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012904/BDB012904.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012904/BDB012904.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM281220 IC50 0.27 nM Very high DOI: 10.7270/Q2PC34F7 1