< Back to small molecule database

US10022354, Example 208

E3L012952
Internal ID: BDB012952
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB012952/BDB012952.sdf
Basic Properties
Compound ID
E3L012952
Internal ID
BDB012952
Molecular formula
C15H20N4O2
Molecular weight
288.351000
Exact mass
288.158626
XLogP
1.0278
TPSA
78.0900
HBA / HBD
3 / 2
Rotatable bonds
4
Heavy atoms / rings
21 / 4
Activity summary
IC50 unknown 0.19000000 nM
1 activity record(s) imported
InChIKey
USILWHFEPQEMJI-UHFFFAOYSA-N
SMILES
O=C(NC1CCN(C(=O)c2cc(C3CC3)n[nH]2)C1)C1CC1
Aliases
BDBM281268 (preferred) US10022354, Example 208 (source_name) BDBM281268 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM281268 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM281268 Open - 10.7270/Q2PC34F7
PubChem CID132070224 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(NC1CCN(C(=O)c2cc(C3CC3)n[nH]2)C1)C1CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB012952/BDB012952.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB012952/BDB012952.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB012952/BDB012952.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB012952/BDB012952.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB012952/BDB012952.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM281268 IC50 0.19 nM Very high DOI: 10.7270/Q2PC34F7 1