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US9580437, Example 16

E3L013018
Internal ID: BDB013018
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB013018/BDB013018.sdf
Basic Properties
Compound ID
E3L013018
Internal ID
BDB013018
Molecular formula
C19H16N6O
Molecular weight
344.378000
Exact mass
344.138559
XLogP
2.7333
TPSA
77.2300
HBA / HBD
6 / 1
Rotatable bonds
4
Heavy atoms / rings
26 / 5
Activity summary
IC50 unknown 11.00000000 nM
6 activity record(s) imported
InChIKey
VFLXVDWCZHLLLM-UHFFFAOYSA-N
SMILES
c1cncc(-c2cnc(NCc3cccc4c3CCO4)n3cnnc23)c1
Aliases
BDBM291701 (preferred) US9580437, Example 16 (source_name) BDBM291701 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM291701 medium
; target=Polycomb protein EED; Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM291701 Open - 10.7270/Q29W0JNH; 10.7270/Q24T6MD7
PubChem CID121432827 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready c1cncc(-c2cnc(NCc3cccc4c3CCO4)n3cnnc23)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB013018/BDB013018.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB013018/BDB013018.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB013018/BDB013018.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB013018/BDB013018.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB013018/BDB013018.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291701 IC50 11 nM High DOI: 10.7270/Q24T6MD7 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291701 IC50 24 nM High DOI: 10.7270/Q24T6MD7 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291701 IC50 60 nM High DOI: 10.7270/Q24T6MD7 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291701 IC50 60 nM High DOI: 10.7270/Q29W0JNH 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291701 IC50 11 nM High DOI: 10.7270/Q29W0JNH 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291701 IC50 24 nM High DOI: 10.7270/Q29W0JNH 1