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US9580437, Example 32

E3L013034
Internal ID: BDB013034
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB013034/BDB013034.sdf
Basic Properties
Compound ID
E3L013034
Internal ID
BDB013034
Molecular formula
C20H16ClN5O
Molecular weight
377.835000
Exact mass
377.104338
XLogP
3.9917
TPSA
64.3400
HBA / HBD
5 / 1
Rotatable bonds
4
Heavy atoms / rings
27 / 5
Activity summary
IC50 unknown 23.00000000 nM
6 activity record(s) imported
InChIKey
PDCGXAVHOQAIHN-UHFFFAOYSA-N
SMILES
Clc1ccccc1-c1cnc(NCc2cccc3c2CCO3)n2cnnc12
Aliases
BDBM291717 (preferred) US9580437, Example 32 (source_name) BDBM291717 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM291717 medium
; target=Polycomb protein EED; Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM291717 Open - 10.7270/Q29W0JNH; 10.7270/Q24T6MD7
PubChem CID121432950 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Clc1ccccc1-c1cnc(NCc2cccc3c2CCO3)n2cnnc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB013034/BDB013034.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB013034/BDB013034.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB013034/BDB013034.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB013034/BDB013034.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB013034/BDB013034.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291717 IC50 23 nM High DOI: 10.7270/Q24T6MD7 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291717 IC50 43 nM High DOI: 10.7270/Q24T6MD7 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291717 IC50 115 nM Moderate DOI: 10.7270/Q24T6MD7 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291717 IC50 43 nM High DOI: 10.7270/Q29W0JNH 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291717 IC50 115 nM Moderate DOI: 10.7270/Q29W0JNH 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291717 IC50 23 nM High DOI: 10.7270/Q29W0JNH 1